Fpga thesis pdf

An implementation of the Smith–Waterman Algorithm, SSEARCH, is available in the FASTA sequence analysis package from [1] . This implementation includes Altivec accelerated code for PowerPC G4 and G5 processors that speeds up comparisons 10–20-fold, using a modification of the Wozniak, 1997 approach, [12] and an SSE2 vectorization developed by Farrar [13] making optimal protein sequence database searches quite practical. A library, SSW, extends Farrar's implementation to return alignment information in addition to the optimal Smith–Waterman score. [14]

Fpga thesis pdf

fpga thesis pdf

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